NGFF metadata JSON Schemas

Authors

Affiliations

Glencoe Software, Inc.

German Bioimaging - Society for Microscopy and Image Analysis e.V.

Glencoe Software, Inc.

Howard Hughes Medical Institute, Janelia Research Campus

University of Dundee

Allen Institute for Brain Science

Australian National University

Allen Institute for Cell Science

Friedrich Miescher Institute for Biomedical Research

Allen Institute for Neural Dynamics

Allen Institute for Cell Science

France BioImaging

Dartmouth College

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)

Howard Hughes Medical Institute, Janelia Research Campus

Harvard Medical School

Glencoe Software, Inc.

BioVisionCenter, University of Zurich

Google

European Molecular Biology Laboratory (EMBL)

Fideus Labs

German Bioimaging - Society for Microscopy and Image Analysis e.V.

University of Dundee

Monash Medical Centre

Helmholtz Zentrum München

University of Göttingen

Yikes, LLC.

Carl Zeiss Microscopy GmbH

Howard Hughes Medical Institute, Janelia Research Campus

Arizona State University

German Bioimaging - Society for Microscopy and Image Analysis e.V.

University College London

European Molecular Biology Laboratory (EMBL)

BioVisionCenter, University of Zurich

Uppsala University

ETH Zurich

Howard Hughes Medical Institute, Janelia Research Campus

This section contains JSON schemas for various metadata layouts. Find below links to auto-generated markdown pages or interactive HTML pages for each schema.

Schema	Markdown	HTML
plate	plate	plate
coordinate_systems	coordinate_systems	coordinate_systems
well	well	well
bf2raw	bf2raw	bf2raw
ome	ome	ome
coordinate_transformations	coordinate_transformations	coordinate_transformations
ome_zarr	ome_zarr	ome_zarr
scene	scene	scene
_version	_version	_version
image	image	image
axes	axes	axes
label	label	label

Next-generation file format specification

well_strict Examples

Next-generation file format specification

NGFF metadata JSON Schemas